Journal of Vaccines and Immunology
1AIRC Laboratory, Indonesia
2Faculty of Veterinary Medicine, Indonesia
3Faculty of Pharmacy, Indonesia
4Faculty of Medicine - Universitas Airlangga, Surabaya, Indonesia
Cite this as
Nidom RV, Alamudi MY, Sillehu S, Indrasari S, Suindarti RD, et al. (2017) Construction of Indonesian-Strain Avian Flu Virus Seed Vaccine Using Low Pathogenic Hemagglutinin Gene and Neuraminidase Pr8 Gene through Reverse Genetics. J Vaccines Immunol. 2017; 3(1): 005-011. Available from: 10.17352/jvi.000021
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© 2017 Nidom RV, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Avian Influenza H5N1 has been spreading in Indonesia since 2003. The Avian influenza virus H5N1 actually infects various animals, including birds, mammalian and others. Since 2005, avian influenza virus has infected humans. According to data, there are 132 persons suspected of contracting this virus, and this was one of the highest cases of avian influenza H5N1 outbreak in the world. One of the means of protection against infection is vaccination. Until now there is no H5N1 influenza vaccine extant, because the virus has a high level of pathogenicity, which makes it difficult to obtain a high yield of seed vaccine.
In this research, we constructed H5N1 virus with low pathogenic Hemagglutinin gene and neuraminidase gene from PR8 (H1N1) using reverse genetic method. The new virus then inoculated in embryonated chicken eggs. We tested the H5N1 virus reverse genetic using molecular methods such as PCR and sequencing; and we used EID50 and Intravenous Pathogenicity Index for the pathogenicity test. The new H5N1 virus reverse genetic was also tested in mice to observe the antibody’s titer and challenge.
The result, we found that the low pathogenic H5N1 virus reverse genetic was successfully created. Neuraminidase from PR8 played important role in reducing pathogens in chickens and mice. From molecular data we note that no amino acids were changed, the pathogenicity of H5N1 virus reverse genetic was low, with an Intravenous Pathogenicity Index of 0 and the highest titer was 256 GMT and the highest survival rate was 85.71%.
AI: Avian Influenza; AFC: Antibody Forming Cell; APC: Antigen Presenting Cell; CD-8: Cluster of Differentiation 8; CTL: Cytotoxic T Cell; GFP: Green Fluorescence Protein; HA: Hemaglutinin; HA0: Hemaglutinin 0; HA1: Hemaglutinin 1; HA2: Hemaglutinin 2; HAU: Hemaglutinin Unit; HEK: Human Embryonic Kidney; HI: Hemaglutination Inhibition; HPAI: Highly Pathogenic Avian Influenza; IFN-γ: Interferon γ; IgA: Imunoglobulin A; IgE: Imunoglobulin E; IgG1: Imunoglobulin G1; IgG2a: Imunoglobulin G2a; IL-1β: Interleukin-1β; IL-2: Interleukin-2; IL-4: Interleukin-4; IL-5: Interleukin-5; IL-12: Interleukin-12; IVPI: Intravenous Pathogenicity Index; LPAI: Low Pathogenic Avian Influenza; NA: Neuraminidase; PBS: Phosphate Buffer Saline; PCR: Polymerase Chain Reaction; PR-8: Puerto Rico 8; RG: Reverse Genetic; RNA: Ribonucleic Acid; SPF: Specific Pathogen Free; Th1: T helper 1; Th2: T helper 2; VLP: Virus Like Particle; WHO: World Health Organization.
The Avian Influenza (AI), or better known in Indonesia as flu burung (“Bird’s Flu”), has spread in Indonesia since mid-2003. Initially, the AI virus infected animals (poultry, mammals, etc.). However, since 2005, AI has begun to infect humans. According to the latest data, the number of suspect human victims infected by Avian Influenza in Indonesia were 199 people [1], although in 2017 no human case reported but the number of death people in Indonesia caused by H5N1 virus still the largest number in the world.
Prevention and treatment of Avian Influenza in humans in Indonesia has been facing several obstacles ranging from disease sources such as poultry and other animals have not been fully controlled, until the understanding of the people recognize the early symptoms of Avian Influenza disease, which is difficult to distinguish from other influenza, as well as antiviral Avian Influenza not yet available in the community. Generally fatal victims were caused late in handling this AI disease [2].
The readiness of prevention and medication actions against this disease is necessary, and all efforts using Indonesia’s potentials must be made. One of the most effective methods of prevention is through vaccination program. Therefore, if the control of Bird’s Flu infection in humans uses the vaccination program, one of the requirements that must be met is the availability of seed vaccine that is already, and that can be adapted, to the human body, so that they can trigger the optimum specific antibodies in order to minimize or eliminate the infecting virus [3].
Based on its pathogenicity, avian influenza virus can be distinguished into two namely Low Pathogenic Avian Influenza (LPAI) with mild clinical symptoms, such as H7N9 subtype, and Highly Pathogenic Avian Influenza (HPAI), such as H5N1 subtype with more severe clinical symptoms than LPAI [4,5].
The constraints faced by the world today are virtually evolved nature of the virus, so its pathogenicity is unstable. The presence of antigenic drift in the H5N1 virus may affect the production of influenza vaccine, resulting in the production of caution in the selection of viral seed vaccines.
The considerations of producing good human Avian Influenza H5N1 vaccine are determined not only by the accuracy of selecting H5N1 virus as seed vaccine, but also by efficiency at production level. Avian Influenza virus H5N1 is highly pathogenic: if inoculated to embryonic chicken eggs as virus culture medium (egg based vaccine), it would soon kill the chicken egg’s embryo. Consequently, high virus titration efficiency rate could not be obtained. One way to get a stable influenza vaccine seed is by reverse genetic method. This method is an attempt to reconstruct a virus from copying a full-length genome into a new virus clone as programmed. This method is commonly used in the field of modern virology with genetic control. The use of reverse genetic coupled with in vitro mutagenesis can be applied to accelerate progress in understanding the life cycle of influenza viruses, generate viruses for live-attenuated vaccines and use of influenza viruses as vaccines and gene delivery vectors.
The principle of the reverse genetic method is to eliminate the pathogenicity nature of the H5N1 virus used as a vaccine seed without losing its immunogenicity, so that seed vaccines are found to be capable of triggering specific antibodies against influenza viruses, especially H5N1 but not harmful to vaccinated individuals. How to eliminate the viral nature of the virus by reverse genetic method was by removing some amino acid arrangement in the multi-amino acid HA cleavage site of the seed of the virus, through the stages of mutagenesis virus seed vaccine, thus, pathogenicity will turn into non-pathogenicity. The result of the HA gene, which has been removed from the amino acid, was reconstituted into a new virus (rescue virus) ready to be propagated as a vaccine seed.
Airlangga University, through the Avian Influenza-zoonosis Research Center (AIRC), was able to develop and generate Avian Influenza H5N1 virus seed vaccine with original Indonesian strain in 2011 (unpublished). The preparation of Avian Influenza H5N1 virus seed vaccine construction has yielded a ratio of 1 (one) embryonic chicken’s egg for 1 (one) dose. The construction was made of a genome order comprising of HA and NA genes of Avian Influenza H5N1 virus that infected humans in Indonesia in 2007. HA genes initially undergo in vitro mutagenesis, while the NA gene was not treated and match the original genome. Meanwhile, other genes were originated from PR-8 virus according to WHO recommendation. Even though the result was good, the yield of the propagation of the virus to be produced must be increased in order to satisfy mass-production requirements in the industry.
Airlangga University, through the Avian Influenza-zoonosis Research Center (AIRC), was able to develop and generate Avian Influenza H5N1 virus seed vaccine with original Indonesian strain in 2011 (unpublished). The preparation of Avian Influenza H5N1 virus seed vaccine construction has yielded a ratio of 1 (one) embryonic chicken’s egg for 1 (one) dose. The construction was made of a genome order comprising of HA and NA genes of Avian Influenza H5N1 virus that infected humans in Indonesia in 2007. HA genes initially undergo in vitro mutagenesis, while the NA gene was not treated and match the original genome. Meanwhile, other genes were originated from PR-8 virus according to WHO recommendation. Even though the result was good, the yield of the propagation of the virus to be produced must be increased in order to satisfy mass-production requirements in the industry.
Based on research [6], it was mentioned that the difference in replication of reassortant virus in embryonated chicken eggs increased by replacing at least 2 HA residues (G186V and V226I) to improve HA receptor attachment capacity or by replacing at least 2 NA (E119Q and Q136K) residues to decrease NA enzymatic activity, so a balance between HA and NA activity were critical for the replication of influenza viruses in a different host. Until now, no preparation of avian flu virus seed virus had been done by using NA fragment from low pathogenic virus.
This study was expected to obtain the avian influenza H5N1 virus seed with higher viral yield compared with the construction of the avian flu H5N1 virus earlier in 2011, by altering the construction of the AI virus genome of avian influenza virus by replacing the neuraminidase genes from the HPAI Avian Influenza virus with NA gene derived from LPAI.
Human embryonic kidney 293T (HEK-293T) cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS). Madin-Darby canine kidney (MDCK) cells were maintained in minimum essential medium (MEM) supplemented with 5% FBS.
To generate reassortant viruses, we used plasmid-based reverse genetics (Neumann et al., 1999). Viral RNA from D42007 was extracted from allantoic fluid by using a commercial kit (Qiagen) and was converted to cDNA using reverse transcriptase (SuperScript III; GIBCO-BRL) and primers based on the consensus sequences of the 3-prime ends of the RNA segments for the H5 viruses.
By using an inverse PCR method, we altered the HA cleavage site sequence (RERRRKKR) of the wild-type virus to create the avirulent type sequence (RETR), as described previously [7]. Seven pPolI plasmids, each containing an internal gene of PR8(Cambridge) that were constructed from NIBRG-14. Using these PolI plasmids, we conducted reverse genetics (12-plasmid) systems [8]. Briefly, a total of 12 plasmids containing 8 PolI and 4 plasmids expressing PR8(UW) NP, PA, PB1, or PB2 were transfected to 293T cells [9]. Supernatants containing infectious viruses were harvested and used in further experiments.
The Avian influenza virus reverse genetic (RG) that had been harvested from the 293T cells, then adapted to embryonated chicken eggs, was purified. Avian influenza virus (RG) was dissolved in PBS isotonic buffer fluid with pH 7.0-7.4 containing antibiotics. Antibiotics were used: penicillin 2000 units per ml, streptomycin 2 mg per ml, gentamicin 50 ug per ml and mycostatin 1,000 units per ml. This suspension was incubated for one hour and inoculated virus solution in embryonated chicken eggs and incubated at 37° C.
The death of the embryo was observed every day, up to the third day after inoculation. The fourth day, all embryonated chicken eggs were stored at 4o C for 24 hours. All eggs were harvested by allantoic, then Hemagglutinin test (HA test) was performed.
The procedures of IVPI was the allantoic fluid of the influenza virus with a HA titre greater than 1/16 diluted 1:10 in sterile isotonic fluid. From the dilution of the virus each of chickens SAN (Specific Antibody Negative) then injected 0.1 ml. The chickens were observed at intervals of 24 hours for 10 days. At each observation, the chickens were scored ‘0’ if normal, ‘1’ if they looked sick, ‘2’ when they felt severe pain, and ‘3’ if the chickens were dead.
Calculation of IVPI was an average per chickens per observation over a period for 10 days. An index value of 3.00 means that the chickens died within 24 hours; whereas an index value of 0.00 means that no chickens showed any clinical symptoms during the 10 days of observation [10].
The mice used in this study were specific pathogen free (SPF) and strain BALB/C (Mus musculus) mice. The study was done in the cages insulators in Animal BSL - 3 facilities. To conduct immunology studied, we performed vaccination using mice that were divided into five groups, wherein each group consists of 7 mice. For challenge studied we performed anaesthetic from 0.03 to 0.04 ml of a mixture of 5 ml ketamine HCl (100 mg//ml) and 1 ml xylazine (20 mg//ml). Furthermore, the virus was infected intranasal as much as 0.5 ml with a concentration of 107 TCID - 50 [11].
The construction of avian influenza virus (RG) in this study used the reverse genetic method, which was one of the latest molecular biology techniques, especially in studying Influenza virus. Using this method, we were able to develop and improve prophylactic and therapeutic intervention against influenza virus [12].
The hemagglutinin gene used to construct low pathogenic avian influenza virus was HA gene of highly pathogenic H5N1 Indonesia strain (A//Indonesia//D4//2007 (H5N1)). It was then transformed into low pathogenic strain using reverse genetic. Mutagenesis was done by eliminating (deleting) a nucleotide sequence that encodes the amino acid lysine (K) and arginine (R), and by changing (substituting) amino acid sequence that encodes the amino acid serine (S) to threonine (T) at the cleavage site, so the sequence of amino acid, originally RRKKR (poly lysine and arginine), changed into RETR.
The result of nucleotide sequencing from this mutation process as shown in Figure 1, which showed the amino acid in the region 360 of the Hemagglutinin (HA) protein of the wild type H5N1 which was original virus had deletion of amino acid RRKK and substitution of amino acid S (serine) to T (threonine).
Based on the analysis of amino acids, we did not find the mutation in the amino acid sequence of the HA gene cleavage site, except in the regions that were expected to change as desired.
Figure 1: Alignment of HA-H5 gene. Amino acid alignment of HA-H5 –RG and original virus H5-D4. HA-D4 was original strain and IDN5-7-2 was low pathogenic mutated HA. Amino acid reference HA-5-2005 was taken from GenBank accession no. CY116646, while HA-D4 from AIRC collection data.
The results of this study, which was performed in accordance with the methods recommended by WHO guidelines, show that reverse genetic methods and recombination of mutagenesis cleavage site of HA genes to eliminate the virulence of H5N1 virus are further tested for their pathogenicity in embryonated chicken eggs and using the Intravenous Pathogenicity Index [13].
This was studied using neuraminidase (NA) gene derived from the H1N1 virus Puerto Rico, (A//Puerto Rico//08//1934) H1N1, which was obtained from the Institute of Medical Science of the University of Tokyo, Japan. NA gene was then inserted in pHH21 plasmid for vRNA together with seven other influenza virus genes (HA, NP, NS1, PB1, PB2, PA, M).
The plasmid combination of pHH21 - NA was reproduced through cloning by using E.coli DH5α, in order to discover the cloning process and the combination of electrophoresis. The best colony was then taken to be used as transfection agent. Plasmid - NA pHH21 of 4500 bp. The clone was then sequenced to find out the sequence of nucleotides and amino acids, in order to ensure that these clones and combinations did not undergo either undesirable nucleotide or amino acid mutations.
Figure 2: Alignment of neuraminidase gene. Neuraminidase gene sources with accession no. EF190984 (NA-PR8-LV), EF190976 (NA_PR8-HV) and AB671290 (NA-PR8-Tokyo) were obtained from GenBank.
Alignment result from the NA-PR8 gene plasmid showed no amino acid difference compared to the original NA-PR8 gene (NA-PR8-Tokyo), so the NA-PR8 gene plasmid could be used for transfection in subsequent studies.
Previous research had shown that virus neuraminidase largely had the role of releasing and spreading replicated virus in cells [14]. Sources of neuraminidase originally derived from the H5N1 virus was converted to a neuraminidase derived from H1N1, thereby increasing the low pathogenic avian influenza virus (RG). The neuraminidase gene selected in this study was neuraminidase PR8 gene because it was low pathogenic. The neuraminidase gene had a sequence as well as a length on the stalk region of the region that varies depending on each influenza virus. Based on [15], the balance of HA and NA gene function in an influenza virus greatly influences the growth of the virus. Therefore, in this studied we picked neuraminidase from PR8 that could increase viral yield and had high immunogenicity level so that it could be used as seed vaccine influenza H5N1.
In the transfection process, we used 293T cell as propagation media. 293T cells were eukaryotic (human embryonic kidney) cells, which leads to the transcription of the reporter gene by cellular RNA polymerase I, thereby generating influenza virus-like RNA. Based on the research results of [8], which showed that cells 293T transfected with plasmids encoding a structural protein of influenza A viruses; and with plasmids encoding influenza virus-like vRNA (which contains a copy of antisense of cDNA GFP (Green Fluorescence Protein)); were flanked by the promoter of RNA polymerase I and terminator, generated more than 104 VLP (Virus Like Particle) influenza containing GFP vRNA. This means that 293T cells could be used as a host in the process of influenza a virus transfection.
The result of EID50 titer for viral propagation, originating from inoculation of embryonated chicken eggs, generated titer for Avian Influenza virus (RG) low pathogenic (HA-H5 (RG)/NA-PR8) was 1.9304 x 105/ml. The resulting titer was lower than the titer of avian influenza virus (RG) low -high (HA-H5 (RG)/NA-H5), which was 3.1623 x 107/ml. Complete data of each measurement titer can be seen in table 1.
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